MBC header

Macromolecules: Structure, Shape, and Information

Molecular Recognition Processes1

Outline
Introduction

The Specific Interactions of a Macromolecule Depend on Weak, Noncovalent Bonds

A Helix Is a Common Structural Motif in Biological Structures Made from Repeated Subunits

Diffusion Is the First Step to Molecular Recognition

Thermal Motions Bring Molecules Together and Then Pull Them Apart

The Equilibrium Constant Is a Measure of the Strength of an Interaction Between Two Molecules

Atoms and Molecules Move Very Rapidly

Molecular Recognition Processes Can Never Be Perfect

Summary
Figures
Figure 3-9: The principle of equilibrium
Tables
Table 3-3: The Relationship Between Free-Energy Differences and Equilibrium Constants
Section References
Cantor, C.R.; Schimmel, P.R.Biophysical Chemistry, Part I and Part III. New York: W.H. Freeman, 1980.

Eisenberg, D.; Crothers, D.Physical Chemistry with Applications to the Life Sciences. Menlo Park, CA: Benjamin-Cummings, 1979.

Pauling, L.The Nature of the Chemical Bond, 3rd ed. Ithaca, NY: Cornell University Press, 1960.

Whitesides, G.M.; Mathias, J.P.; Seto, C.T.Molecular self-assembly and nanochemistry: a chemical strategy for the synthesis of nanostructures. Science 254:1312-1319, 1991 [PubMed]
References
Lehninger, A.L.Bioenergetics: The Molecular Basis of Biological Energy Transformations, 2nd ed. Menlo Park, CA: Benjamin-Cummings, 1971.
The Equilibrium Constant Is a Measure of the Strength of an Interaction Between Two Molecules5

    The precise strength of the bonding between two molecules is a useful index of the specificity of their interaction. To illustrate how the binding strength is measured, let us consider a reaction in which molecule A binds to molecule B. The reaction will proceed until it reaches an equilibrium point, at which the rates of formation and dissociation are equal (Figure 3-9). The concentrations of A, B, and the complex AB at this point can be used to determine an equilibrium constant (K) for the reaction, as explained in Figure 3-9. This constant is sometimes termed the affinity constant and is commonly employed as a measure of the strength of binding between two molecules: the stronger the binding, the larger is the value of the affinity constant.
    The equilibrium constant of a reaction in which two molecules bind to each other is related directly to the standard free-energy change for the binding (DG°) by the equation described in Table 3-3. The table also lists the delta-G° values corresponding to a range of K values. Affinity constants for simple binding interactions in biological systems often range between 103 and 1012 liters/mole; this corresponds to binding energies in the range 4-17 kcal/mole, which could arise from 4 to 17 average hydrogen bonds.


© 1994 by Bruce Alberts, Dennis Bray, Julian Lewis, Martin Raff, Keith Roberts, and James D. Watson.